Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LIHC rs62165619 chr2:49659571 C/T 0 363 19.4 20.4 0.75 KM Plot
LIHC rs6601391 chr8:9740690 C/G 7.56E-7 368 0.65 22 18.6 KM Plot
LIHC rs66465726 chr11:73532247 C/T 4.39E-6 368 19.57 20.48 1.87 KM Plot
LIHC rs6715033 chr2:37096401 T/C 1.66E-5 368 20.45 12.17 8.73 KM Plot
LIHC rs6739553 chr2:37102675 T/C 1.23E-5 366 20.45 12.17 8.73 KM Plot
LIHC rs6756485 chr2:240288470 C/A 1.72E-5 368 19.95 20.42 10.12 KM Plot
LIHC rs6756876 chr2:37096258 C/A 1.66E-5 368 20.45 12.17 8.73 KM Plot
LIHC rs6763734 chr3:7925618 C/T 1.88E-7 368 19.15 23.27 3.03 KM Plot
LIHC rs6882491 chr5:94773203 G/A 5.76E-6 360 19.3 20.03 2.18 KM Plot
LIHC rs6883612 chr5:94773149 C/T 5.76E-6 360 19.3 20.03 2.18 KM Plot
LIHC rs7085463 chr10:129507825 A/G 1.1E-5 366 2.17 22.07 19.43 KM Plot
LIHC rs71131291 chr14:56017809 A/ATTTAC 6.21E-9 368 18.93 26.63 1.13 KM Plot
LIHC rs71131292 chr14:56018027 T/TAA 6.21E-9 368 18.93 26.63 1.13 KM Plot
LIHC rs7121072 chr11:107174439 C/A 8.11E-6 365 19.83 18.78 1.87 KM Plot
LIHC rs71274372 chr5:145703691 A/AAAAAC 5.96E-5 352 19.7 21.1 10.5 KM Plot